Use your bedroom floor to make piles of all the papers, dividing them into different segments or chapters. 

Some of them will overlap into multiple segments and that can also be taken care of. After the segmentation, kindly assign a number to each paper.

Create a topic of your research assignment along with the subtopics labeled as A, B, C, D etc. Each topic can now be a different pile, separated with the help of sticky notes.

Now sort all your papers according to the piles, and when they are complete, start to label each piece of research...

Place your piles into separate folders labeled like the subtopics, stapling the sticky notes on the outside of it’s matching folder.

Now you can start writing your paper as you have chronological, topic-wise segregation of all your notes. While writing the paper, do check if the notes are ...